Class CigarValidationError

CIGAR validation errors with detailed mismatch analysis

Hierarchy (View Summary)

ValidationError
- CigarValidationError

Index

Constructors

Methods

withMismatchAnalysis toString

Properties

code lineNumber? context? cigar sequenceLength consumedBases mismatchPercentage

Constructors

constructor

new CigarValidationError(
    message: string,
    cigar: string,
    sequenceLength: number,
    consumedBases: number,
    mismatchPercentage: number,
    lineNumber?: number,
    context?: string,
): CigarValidationError
Parameters
- message: string
- cigar: string
- sequenceLength: number
- consumedBases: number
- mismatchPercentage: number
- OptionallineNumber: number
- Optionalcontext: string
Returns CigarValidationError
Overrides ValidationError.constructor
- Defined in src/errors.ts:558

Methods

`Static`withMismatchAnalysis

withMismatchAnalysis(
    cigar: string,
    sequenceLength: number,
    consumedBases: number,
    lineNumber?: number,
): CigarValidationError
Create CIGAR error with detailed analysis
Parameters
- cigar: string
- sequenceLength: number
- consumedBases: number
- OptionallineNumber: number
Returns CigarValidationError
- Defined in src/errors.ts:574

toString

toString(): string
Enhanced toString with CIGAR analysis

Returns string
Overrides ValidationError.toString
- Defined in src/errors.ts:597

Properties

`Readonly`code

code: string

`Optional` `Readonly`lineNumber

lineNumber?: number

`Optional` `Readonly`context

context?: string

`Readonly`cigar

cigar: string

`Readonly`sequenceLength

sequenceLength: number

`Readonly`consumedBases

consumedBases: number

`Readonly`mismatchPercentage

mismatchPercentage: number