Genotype API Documentation - v0.1.0
    Preparing search index...

      Genotype API Documentation - v0.1.0

      Functions

      createDecompressor
      createFastaRecord
      createFastqRecord
      createKmerRecord
      createAlignmentRecord
      withSequence
      withQuality
      detectFormat
      parseAny
      charToScore
      scoreToChar
      qualityToScores
      scoresToQuality
      convertQuality
      detectEncoding
      detectEncodingWithConfidence
      getEncodingInfo
      calculateQualityStats
      calculateAverageQuality
      complement
      reverse
      reverseComplement
      toRNA
      toDNA
      removeGaps
      replaceAmbiguousBases
      seqops

      Classes

      BackendUnavailableError
      BackendService
      GenotypeError
      ValidationError
      ParseError
      DSVParseError
      CompressionError
      FileError
      MemoryError
      SequenceError
      AlphabetValidationError
      QualityError
      BedError
      SamError
      BamError
      StreamError
      BufferError
      TimeoutError
      CompatibilityError
      FormatDetectionError
      GrepError
      LocateError
      SplitError
      ConcatError
      GenomicCoordinateError
      ChromosomeNamingError
      SecurityPathError
      ResourceLimitError
      PairSyncError
      AlignmentParser
      BedParser
      BedWriter
      FastaParser
      FastaWriter
      FastqParser
      FastqWriter
      CharSet
      GenotypeString
      SeqOps
      SequenceStatsCalculator
      SubseqExtractor

      Interfaces

      FastaRecordInput
      FastqRecordInput
      KmerRecordInput
      AlignmentRecordInput
      DetectionResult
      PairOptions
      SequenceStats
      StatsOptions
      SubseqOptions
      FilterOptions
      TransformOptions
      CleanOptions
      ConcatOptions
      WindowOptions
      AbstractSequence
      QualityScoreBearing
      FASTXSequence
      FastaSequence
      FastqSequence
      KmerSequence
      BedInterval
      MotifLocation
      ParserOptions
      CompressionDetection
      DecompressorOptions
      AlignmentRecord
      FormatDetection
      FileReaderOptions
      StreamChunk
      FileMetadata
      LineProcessingResult
      StreamStats

      Type Aliases

      DNASequence
      IUPACSequence
      RNASequence
      PrimerSequence
      dna
      iupac
      rna
      primer
      isDNASequence
      isIUPACSequence
      isRNASequence
      isPrimerSequence
      QualityScore
      AsciiOffset
      QualityOptions
      ValidateOptions
      QualityEncoding
      QualityEncoding
      Strand
      ParseResult
      CompressionFormat
      CompressedStream
      FilePath

      Variables

      backendRuntime
      CompressionDetector
      GzipDecompressor
      ZstdDecompressor
      BedFormat
      BedUtils
      FastaUtils
      Bases
      VERSION
      SUPPORTED_FORMATS
      SUPPORTED_COMPRESSIONS

      References

      Sequence → AbstractSequence

      Settings

      Member Visibility

      On This Page

      Functions
      Classes
      Interfaces
      Type Aliases
      Variables
      References