Genotype API Documentation - v0.1.0
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      Genotype API Documentation - v0.1.0

      Functions

      createDecompressor
      isCompressionSupported
      getRecommendedCompression
      estimateCompressionRatio
      createContextualError
      getErrorSuggestion
      toNumbers
      scoresToString
      getOffset
      calculateStats
      detectFormat
      parseAny
      detectRuntime
      getRuntimeCapabilities
      getRuntimeGlobals
      getOptimalBufferSize
      getRuntimeInfo
      readLines
      processBuffer
      pipe
      processChunks
      batchLines
      setGenotypeLibPath
      resolveGenotypeLib
      isNativeLibAvailable
      getCurrentPlatformTarget
      detectEncodingImmediate
      detectEncodingStatistical
      detectEncodingWithConfidence
      seqops

      Classes

      GenotypeError
      ValidationError
      ParseError
      CompressionError
      FileError
      MemoryError
      SequenceError
      QualityError
      BedError
      SamError
      BamError
      StreamError
      BufferError
      TimeoutError
      CompatibilityError
      FormatDetectionError
      GrepError
      SplitError
      ConcatError
      CigarValidationError
      GenomicCoordinateError
      ChromosomeNamingError
      SecurityPathError
      ResourceLimitError
      BAIIndexError
      BAMParser
      BAIReader
      BAIWriter
      BAMWriter
      BGZFCompressor
      BedParser
      BedWriter
      FastaParser
      FastaWriter
      FastqParser
      FastqWriter
      SAMParser
      SAMWriter
      ConcatProcessor
      SeqOps
      SequenceStatsCalculator
      SubseqExtractor

      Interfaces

      BAMWriterOptions
      RuntimeCapabilities
      LibGenotype
      DetectionResult
      SequenceStats
      StatsOptions
      SubseqOptions
      FilterOptions
      TransformOptions
      CleanOptions
      QualityOptions
      ValidateOptions
      ConcatOptions
      AbstractSequence
      FASTXSequence
      FastaSequence
      FastqSequence
      SAMTag
      SAMHeader
      SAMAlignment
      SamRecord
      BedInterval
      MotifLocation
      ParserOptions
      CompressionDetection
      DecompressorOptions
      BAMAlignment
      BGZFBlock
      BAMHeader
      FormatDetection
      FileReaderOptions
      StreamChunk
      FileMetadata
      LineProcessingResult
      FileValidationResult
      StreamStats
      FileIOContext
      BAIChunk
      BAIBin
      BAILinearIndex
      BAIReference
      BAIIndex
      BAIQueryResult
      BAIStatistics
      BAIWriterOptions
      BAIReaderOptions

      Type Aliases

      Runtime
      DNASequence
      IUPACSequence
      RNASequence
      PrimerSequence
      dna
      iupac
      rna
      primer
      isDNASequence
      isIUPACSequence
      isRNASequence
      isPrimerSequence
      QualityEncoding
      QualityEncoding
      SAMFlag
      CIGARString
      MAPQScore
      Strand
      ParseResult
      CompressionFormat
      CompressedStream
      InferSchema
      FilePath
      FileHandle
      VirtualOffset
      BAIBinNumber

      Variables

      CompressionDetector
      GzipDecompressor
      ZstdDecompressor
      ERROR_SUGGESTIONS
      BAMUtils
      VirtualOffsetUtils
      BinningUtils
      BedFormat
      BedUtils
      FastaUtils
      FastqUtils
      QualityScores
      SAMUtils
      VERSION
      SUPPORTED_FORMATS
      SUPPORTED_COMPRESSIONS
      FileReader
      StreamUtils
      detectEncoding
      SequenceIdSchema
      SequenceSchema
      QualitySchema
      FastaSequenceSchema
      FastqSequenceSchema
      BedIntervalSchema
      CIGAROperationSchema
      SAMFlagSchema
      MAPQScoreSchema
      SAMTagSchema
      SAMHeaderSchema
      SAMAlignmentSchema
      FilePathSchema
      FileReaderOptionsSchema
      StreamChunkSchema
      FileMetadataSchema
      CompressionFormatSchema
      CompressionDetectionSchema
      DecompressorOptionsSchema
      VirtualOffsetSchema
      BAIBinNumberSchema
      BAIChunkSchema
      BAIBinSchema
      BAILinearIndexSchema
      BAIReferenceSchema
      BAIIndexSchema
      BAIQueryResultSchema
      BAIWriterOptionsSchema
      BAIReaderOptionsSchema

      References

      Sequence → AbstractSequence

      Settings

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      Type Aliases
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