Interface BAIReference

BAI reference sequence index Contains hierarchical bins and linear index for one reference sequence

interface BAIReference {
    bins: ReadonlyMap<number, BAIBin>;
    linearIndex: BAILinearIndex;
    referenceName?: string;
    referenceLength?: number;
}

Index

Properties

bins linearIndex referenceName? referenceLength?

Properties

`Readonly`bins

bins: ReadonlyMap<number, BAIBin>

Map of bin ID to bin data for hierarchical indexing

`Readonly`linearIndex

linearIndex: BAILinearIndex

Linear index for 16KB genomic intervals

`Optional` `Readonly`referenceName

referenceName?: string

Reference sequence name for validation

`Optional` `Readonly`referenceLength

referenceLength?: number

Reference sequence length for bounds checking