Genotype API Documentation - v0.1.0
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    Interface BAMAlignment

    BAM alignment record extending SAM with binary-specific metadata

    interface BAMAlignment {
        qname: string;
        flag: SAMFlag;
        rname: string;
        pos: number;
        mapq: MAPQScore;
        cigar: CIGARString;
        rnext: string;
        pnext: number;
        tlen: number;
        seq: string;
        qual: string;
        tags?: SAMTag[];
        lineNumber?: number;
        format: "bam";
        blockStart?: number;
        blockEnd?: number;
        binIndex?: number;
    }

    Hierarchy (View Summary)

    Index

    Properties

    qname: string
    flag: SAMFlag
    rname: string
    pos: number
    mapq: MAPQScore
    rnext: string
    pnext: number
    tlen: number
    seq: string
    qual: string
    tags?: SAMTag[]
    lineNumber?: number
    format: "bam"
    blockStart?: number

    BGZF block offset for random access

    blockEnd?: number

    BGZF block end offset

    binIndex?: number

    BAI bin for indexing