Genotype API Documentation - v0.1.0
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    Interface QualityOptions

    Options for FASTQ quality operations

    These operations only apply to FASTQ sequences with quality scores.

    interface QualityOptions {
        minScore?: number;
        maxScore?: number;
        trim?: boolean;
        trimThreshold?: number;
        trimWindow?: number;
        trimFromStart?: boolean;
        trimFromEnd?: boolean;
        encoding?: "phred33" | "phred64";
    }
    Index

    Properties

    minScore? maxScore? trim? trimThreshold? trimWindow? trimFromStart? trimFromEnd? encoding?

    Properties

    minScore?: number

    Minimum average quality score

    maxScore?: number

    Maximum average quality score

    trim?: boolean

    Enable quality trimming

    trimThreshold?: number

    Score threshold for trimming

    trimWindow?: number

    Sliding window size for quality trimming

    trimFromStart?: boolean

    Trim low quality from 5' end

    trimFromEnd?: boolean

    Trim low quality from 3' end

    encoding?: "phred33" | "phred64"

    Quality score encoding

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