Genotype API Documentation - v0.1.0
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    Interface SamRecord

    Legacy SAM/BAM alignment record (deprecated - use SAMAlignment)

    Use SAMAlignment instead for better type safety

    interface SamRecord {
        qname: string;
        flag: number;
        rname: string;
        pos: number;
        mapq: number;
        cigar: string;
        rnext: string;
        pnext: number;
        tlen: number;
        seq: string;
        qual: string;
        tags: Record<string, unknown>;
        lineNumber?: number;
    }
    Index

    Properties

    qname flag rname pos mapq cigar rnext pnext tlen seq qual tags lineNumber?

    Properties

    qname: string

    Query template name

    flag: number

    Bitwise flag

    rname: string

    Reference sequence name

    pos: number

    1-based leftmost mapping position

    mapq: number

    Mapping quality

    cigar: string

    CIGAR string

    rnext: string

    Reference name of the mate/next read

    pnext: number

    Position of the mate/next read

    tlen: number

    Observed template length

    seq: string

    Segment sequence

    qual: string

    ASCII of Phred-scaled base quality+33

    tags: Record<string, unknown>

    Optional fields

    lineNumber?: number

    Original line number for error reporting

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