Genotype API Documentation - v0.1.0
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    Interface StatsOptions

    Configuration options for statistics calculation

    Controls which statistics are computed and how they are formatted.

    interface StatsOptions {
        detailed?: boolean;
        tabular?: boolean;
        includeQuality?: boolean;
        gapChars?: string;
        ambiguousChars?: string;
        includeComposition?: boolean;
        fileName?: string;
    }
    Index

    Properties

    detailed? tabular? includeQuality? gapChars? ambiguousChars? includeComposition? fileName?

    Properties

    detailed?: boolean

    Calculate detailed statistics including N50/N90 (slower)

    tabular?: boolean

    Output in tabular format for command-line display

    includeQuality?: boolean

    Include quality statistics for FASTQ sequences

    gapChars?: string

    Characters considered as gaps (default: "-.*")

    ambiguousChars?: string

    Characters considered as ambiguous (default: "NRYSWKMBDHV")

    includeComposition?: boolean

    Calculate base composition breakdown

    fileName?: string

    File path or identifier for the statistics

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